1BP_DBSPLIT(1) User Contributed Perl Documentation BP_DBSPLIT(1)
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6 dbsplit - script to split an input set of database(s) into smaller
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10 dbsplit.PLS --size 50 [-i inputfile] [-if inputformat] [-of outputformat]
11 [--prefix outputprefix] [ < file1 file 2 OR file1 file2]
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14 This script will take as input a list of filenames or a single file or
15 from STDIN a sequence database and split the database into separate
16 files of X numbers of sequences. You specify X with the "--size/-s"
17 parameter. The input and output sequence format is any that is
18 supported by bioperl (fasta,embl,genbank,gcg, swissprot, etc).
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20 You can specify the input data either as a single file with -i
21 filename, or as a single file as an argument like
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23 % dbsplit file1 file2
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25 or as a list of sequence data with
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27 % cat file1 file2 file3 | dbsplit
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29 You'll want to use the "--prefix" to specify what the output prefix
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33 Mailing Lists
34 User feedback is an integral part of the evolution of this and other
35 Bioperl modules. Send your comments and suggestions preferably to the
36 Bioperl mailing list. Your participation is much appreciated.
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38 bioperl-l@bioperl.org - General discussion
39 http://bioperl.org/wiki/Mailing_lists - About the mailing lists
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41 Reporting Bugs
42 Report bugs to the Bioperl bug tracking system to help us keep track of
43 the bugs and their resolution. Bug reports can be submitted via the
44 web:
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46 http://bugzilla.open-bio.org/
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49 Jason Stajich, jason-at-bioperl-dot-org
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53perl v5.12.0 2010-04-29 BP_DBSPLIT(1)