1BP_DOWNLOAD_QUERY_GENBAUNsKe(r1)Contributed Perl DocumenBtPa_tDiOoWnNLOAD_QUERY_GENBANK(1)
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NAME

6       download_query_genbank - script to query Genbank and retrieve records
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USAGE

9        download_query_genbank --query "Neurospora[ORGN]" --db nucest -o Ncrassa_ESTs.fa --format fasta
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11        download_query_genbank --queryfile 'filewithquery' --db nucest -o Ncrassa_ESTs.fa --format fasta
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13   Other options
14        Provide ONE of:
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16         --query query string OR
17         --queryfile profile file with query OR
18         --gi --gifile file with list of GIs to download
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20        Database type:
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22        --db database (nucest, protein, nucleotide)
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24        -f --format sequence file output format
25        -v --verbose debugging output
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27   Query options
28        --maxids maximum number of IDs to retrieve in a set
29        --reldate
30        --maxdate maxdate for a record
31        --mindate minimum date for record
32        --datetype edat or mdat (entered or modified)
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AUTHOR Jason Stajich

35       Jason Stajich, jason-AT-bioperl.org
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39perl v5.12.0                      2010-04-29      BP_DOWNLOAD_QUERY_GENBANK(1)
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