1BP_DOWNLOAD_QUERY_GENBAUNsKe(r1)Contributed Perl DocumenBtPa_tDiOoWnNLOAD_QUERY_GENBANK(1)
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6 download_query_genbank - script to query Genbank and retrieve records
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9 download_query_genbank --query "Neurospora[ORGN]" --db nucest -o Ncrassa_ESTs.fa --format fasta
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11 download_query_genbank --queryfile 'filewithquery' --db nucest -o Ncrassa_ESTs.fa --format fasta
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13 Other options
14 Provide ONE of:
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16 --query query string OR
17 --queryfile profile file with query OR
18 --gi --gifile file with list of GIs to download
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20 Database type:
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22 --db database (nucest, protein, nucleotide)
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24 -f --format sequence file output format
25 -v --verbose debugging output
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27 Query options
28 --maxids maximum number of IDs to retrieve in a set
29 --reldate
30 --maxdate maxdate for a record
31 --mindate minimum date for record
32 --datetype edat or mdat (entered or modified)
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35 Jason Stajich, jason-AT-bioperl.org
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39perl v5.12.0 2010-04-29 BP_DOWNLOAD_QUERY_GENBANK(1)