1BP_GCCALC(1)          User Contributed Perl Documentation         BP_GCCALC(1)
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NAME

6       gccalc - GC content of nucleotide sequences
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SYNOPSIS

9         gccalc [-f/--format FORMAT] [-h/--help] filename
10         or
11         gccalc [-f/--format FORMAT] < filename
12         or
13         gccalc [-f/--format FORMAT] -i filename
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DESCRIPTION

16       This scripts prints out the GC content for every nucleotide sequence
17       from the input file.
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OPTIONS

20       The default sequence format is fasta.
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22       The sequence input can be provided using any of the three methods:
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24       unnamed argument
25            gccalc filename
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27       named argument
28            gccalc -i filename
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30       standard input
31            gccalc < filename
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FEEDBACK

34   Mailing Lists
35       User feedback is an integral part of the evolution of this and other
36       Bioperl modules. Send your comments and suggestions preferably to the
37       Bioperl mailing list.  Your participation is much appreciated.
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39         bioperl-l@bioperl.org                  - General discussion
40         http://bioperl.org/wiki/Mailing_lists  - About the mailing lists
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42   Reporting Bugs
43       Report bugs to the Bioperl bug tracking system to help us keep track of
44       the bugs and their resolution. Bug reports can be submitted via the
45       web:
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47         http://bugzilla.open-bio.org/
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AUTHOR - Jason Stajich

50       Email jason@bioperl.org
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HISTORY

53       Based on script code (see bottom) submitted by cckim@stanford.edu
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55       Submitted as part of bioperl script project 2001/08/06
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59perl v5.12.0                      2010-04-29                      BP_GCCALC(1)