1BP_HETEROGENEITY_TEST(1U)ser Contributed Perl DocumentatiBoPn_HETEROGENEITY_TEST(1)
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NAME

6       heterogeneity_test - a test for distinguishing between selection and
7       population expansion.
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SYNOPSIS

10       heterogenetity_test -mut_1/--mutsyn synonymous_mut_count
11       -mut_2/--mutnon nonsyn_mut_count -s/--smaplesize sample_size
12       [-i/--iterations iterations] [-o/--observed observed_D] [-v/--verbose]
13       [--silent ] [-m/--method tajimaD or fuD] [--precision]
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15   DESCRIPTION
16       This is an implementation of the Heterogenetity test as described in
17       Hahn MW, Rausher MD, and Cunningham CW. 2002. Genetics 161(1):11-20.
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19   OPTIONS
20        Options in brackets above are optional
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22        -s or --samplesize samplesize
23        -mut_1 or --mutsyn synonymous mutation count
24        -mut_2 or --mutnon nonsynonmous mutation count
25        -i or --iterations number of iterations
26        -o or --observed   observed D
27        -m or --method     tajimaD or fuD  for Tajima's D or Fu and Li's D
28        -v or --verbose    print out extra verbose messages
29        --silent           Be extra quiet
30        --precision        Level of precision - specify the number of digits
31                          (default 4)
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33   AUTHOR Matthew Hahn <matthew.hahn-at-duke.edu>
34       For more information contact:
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36       Matthew Hahn, <matthew.hahn-at-duke.edu> Jason Stajich
37       <jason-at-bioperl-dot-org>
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41perl v5.12.0                      2010-04-29          BP_HETEROGENEITY_TEST(1)
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