1BP_HETEROGENEITY_TEST(1U)ser Contributed Perl DocumentatiBoPn_HETEROGENEITY_TEST(1)
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6 heterogeneity_test - a test for distinguishing between selection and
7 population expansion.
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10 heterogenetity_test -mut_1/--mutsyn synonymous_mut_count
11 -mut_2/--mutnon nonsyn_mut_count -s/--smaplesize sample_size
12 [-i/--iterations iterations] [-o/--observed observed_D] [-v/--verbose]
13 [--silent ] [-m/--method tajimaD or fuD] [--precision]
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15 DESCRIPTION
16 This is an implementation of the Heterogenetity test as described in
17 Hahn MW, Rausher MD, and Cunningham CW. 2002. Genetics 161(1):11-20.
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19 OPTIONS
20 Options in brackets above are optional
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22 -s or --samplesize samplesize
23 -mut_1 or --mutsyn synonymous mutation count
24 -mut_2 or --mutnon nonsynonmous mutation count
25 -i or --iterations number of iterations
26 -o or --observed observed D
27 -m or --method tajimaD or fuD for Tajima's D or Fu and Li's D
28 -v or --verbose print out extra verbose messages
29 --silent Be extra quiet
30 --precision Level of precision - specify the number of digits
31 (default 4)
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33 AUTHOR Matthew Hahn <matthew.hahn-at-duke.edu>
34 For more information contact:
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36 Matthew Hahn, <matthew.hahn-at-duke.edu> Jason Stajich
37 <jason-at-bioperl-dot-org>
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41perl v5.12.0 2010-04-29 BP_HETEROGENEITY_TEST(1)