1BP_MULTI_HMMSEARCH(1) User Contributed Perl DocumentationBP_MULTI_HMMSEARCH(1)
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NAME

6       multi_hmmsearch - perform a hmmsearch into multiple FASTA files using
7                         an INDEX file
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SYNOPSIS

10       multi_hmmsearch -p hmm_file [-i] -f index_file
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DESCRIPTION

13       Not technically a Bio::Tools::Run script as this doesn't use any
14       Bioperl or Bioperl-run components but it's useful.
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16   Mandatory Options:
17         -p  HMM profile to use for the search.
18         -f  INDEX file that contains a list of FASTA files for the multiple
19             search.
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21   Special Options:
22         -i  Create a new index file with the resulting hmms files. This is
23             useful if you want to pass this list as input arguments into
24             another programs.
25         -h  Show this documentation.
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FEEDBACK

28   Mailing Lists
29       User feedback is an integral part of the evolution of this and other
30       Bioperl modules. Send your comments and suggestions preferably to the
31       Bioperl mailing list. Your participation is much appreciated.
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33         bioperl-l@bioperl.org                  - General discussion
34         http://bioperl.org/wiki/Mailing_lists  - About the mailing lists
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36   Reporting Bugs
37       Report bugs to the Bioperl bug tracking system to help us keep track of
38       the bugs and their resolution. Bug reports can be submitted via the
39       web:
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41         http://bugzilla.open-bio.org/
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AUTHOR

44         Mauricio Herrera Cuadra <arareko-at-campus.iztacala.unam.mx>
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48perl v5.12.0                      2010-04-29             BP_MULTI_HMMSEARCH(1)