1BP_PARSE_HMMSEARCH(1) User Contributed Perl DocumentationBP_PARSE_HMMSEARCH(1)
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NAME

6       parse_hmmsearch - parse single/multiple HMMSEARCH results file(s) with
7                         different output options
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SYNOPSIS

10       parse_hmmsearch [--po] [--ps] -s hmmsearch_file
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12       parse_hmmsearch [--po] [--ps] -m index_file
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DESCRIPTION

15   Mandatory Options:
16         -s  HMMSEARCH file to parse.
17         -m  INDEX file that contains a list of HMMSEARCH files for multiple
18             parsing.
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20   Special Options:
21         --po    Print only the hits that have positive scores.
22         --ps    Print the total of positive scores found.
23         --help  Show this documentation.
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FEEDBACK

26   Mailing Lists
27       User feedback is an integral part of the evolution of this and other
28       Bioperl modules. Send your comments and suggestions preferably to the
29       Bioperl mailing list. Your participation is much appreciated.
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31         bioperl-l@bioperl.org                  - General discussion
32         http://bioperl.org/wiki/Mailing_lists  - About the mailing lists
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34   Reporting Bugs
35       Report bugs to the Bioperl bug tracking system to help us keep track of
36       the bugs and their resolution. Bug reports can be submitted via the
37       web:
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39         http://bugzilla.open-bio.org/
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AUTHOR

42         Mauricio Herrera Cuadra <mauricio at open-bio.org>
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46perl v5.12.0                      2010-04-29             BP_PARSE_HMMSEARCH(1)
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