1BP_PARSE_HMMSEARCH(1) User Contributed Perl DocumentationBP_PARSE_HMMSEARCH(1)
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6 parse_hmmsearch - parse single/multiple HMMSEARCH results file(s) with
7 different output options
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10 parse_hmmsearch [--po] [--ps] -s hmmsearch_file
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12 parse_hmmsearch [--po] [--ps] -m index_file
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15 Mandatory Options:
16 -s HMMSEARCH file to parse.
17 -m INDEX file that contains a list of HMMSEARCH files for multiple
18 parsing.
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20 Special Options:
21 --po Print only the hits that have positive scores.
22 --ps Print the total of positive scores found.
23 --help Show this documentation.
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26 Mailing Lists
27 User feedback is an integral part of the evolution of this and other
28 Bioperl modules. Send your comments and suggestions preferably to the
29 Bioperl mailing list. Your participation is much appreciated.
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31 bioperl-l@bioperl.org - General discussion
32 http://bioperl.org/wiki/Mailing_lists - About the mailing lists
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34 Reporting Bugs
35 Report bugs to the Bioperl bug tracking system to help us keep track of
36 the bugs and their resolution. Bug reports can be submitted via the
37 web:
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39 http://bugzilla.open-bio.org/
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42 Mauricio Herrera Cuadra <mauricio at open-bio.org>
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46perl v5.12.0 2010-04-29 BP_PARSE_HMMSEARCH(1)