1BP_RUN_NEIGHBOR(1) User Contributed Perl Documentation BP_RUN_NEIGHBOR(1)
2
3
4
6 run_neighbor - run Phylip's 'neighbor' program through Bioperl
7
9 run_neighbor [-i inputfile] [-o outfilename]
10
12 Provide an matrix file to run neighbor on. File should be named of the
13 forma file.matrix or file.protdist (the ending doesn't matter, but the
14 program expects a file in the form of (\S+)\.(\S+).
15
16 This will run the application 'neighbor' to build a Neighbor-Joining
17 tree from a protein distance matrix.
18
20 Jason Stajich, jason-AT-open-bio-DOT-org
21
22
23
24perl v5.12.0 2010-04-29 BP_RUN_NEIGHBOR(1)