1BP_SEARCH2BSML(1) User Contributed Perl Documentation BP_SEARCH2BSML(1)
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6 search2bsml - Turn SearchIO parseable reports(s) into a BSML report
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9 Usage:
10 search2bsml [-o outputfile] [-f reportformat] [-i inputfilename] OR
11 file1 file2 ..
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14 This script will turn a protein Search report (BLASTP, FASTP, SSEARCH,
15 AXT, WABA, SIM4) into a BSML File.
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17 The options are:
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19 -i infilename - (optional) inputfilename, will read
20 either ARGV files or from STDIN
21 -o filename - the output filename [default STDOUT]
22 -f format - search result format (blast, fasta,waba,axt)
23 (ssearch is fasta format). default is blast.
24 -h - this help menu
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26 Additionally specify the filenames you want to process on the command-
27 line. If no files are specified then STDIN input is assumed. You
28 specify this by doing: search2gff < file1 file2 file3
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31 Jason Stajich, jason-at-bioperl-dot-org
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35perl v5.12.0 2010-04-29 BP_SEARCH2BSML(1)