1BP_SPLIT_SEQ(1)       User Contributed Perl Documentation      BP_SPLIT_SEQ(1)
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NAME

6       split_seq - splits a sequence into equal sized chunks with an optional
7                   overlapping range
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SYNOPSIS

10       split_seq -c 10000 [-o 1000] [-i] -f seq.in
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DESCRIPTION

13       The script will split sequences into chunks
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15       Mandatory Options:
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17         -c  Desired length of the resulting sequences.
18         -f  Input file (must be FASTA format).
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20       Special Options:
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22         -o  Overlapping range between the resulting sequences.
23         -i  Create an index file with the resulting sequence files. This is
24             useful if you want to pass this list as input arguments into
25             another programs (i.e. CLUSTAL, HMMER, etc.).
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FEEDBACK

28   Mailing Lists
29       User feedback is an integral part of the evolution of this and other
30       Bioperl modules. Send your comments and suggestions preferably to the
31       Bioperl mailing list.  Your participation is much appreciated.
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33         bioperl-l@bioperl.org                  - General discussion
34         http://bioperl.org/wiki/Mailing_lists  - About the mailing lists
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36   Reporting Bugs
37       Report bugs to the Bioperl bug tracking system to help us keep track of
38       the bugs and their resolution. Bug reports can be submitted via the
39       web:
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41         http://bugzilla.open-bio.org/
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AUTHORS

44         Ewan Birney E<lt>birney-at-ebi.ac.ukE<gt>
45         Mauricio Herrera Cuadra E<lt>mauricio at open-bio.orgE<gt>
46         (some enhancements)
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50perl v5.12.0                      2010-04-29                   BP_SPLIT_SEQ(1)
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