1BP_TAXONOMY2TREE(1)   User Contributed Perl Documentation  BP_TAXONOMY2TREE(1)
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NAME

6       taxonomy2tree - Building a taxonomic tree based on the full lineages of
7       a set of species names
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DESCRIPTION

10       taxonomy2tree.PLS: -s Orangutan -s Gorilla -s Chimpanzee -s Human
11       taxonomy2tree.PLS: -s Orangutan -s Gorilla -s Chimpanzee -s "Homo
12       Sapiens"
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14       Can also provide -d to specific the directory to store index files in,
15       -o to specific the location of your nodes file, and -a for the names
16       file.  Or the option -e to use the web-based entrez taxonomy database
17       if you don't have the flatfiles installed.
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19       This script requires that the bioperl-run pkg be also installed.
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21       Providing the nodes.dmp and names.dmp files from the NCBI Taxonomy dump
22       (see Bio::DB::Taxonomy::flatfile for more info) is only necessary on
23       the first time running.  This will create the local indexes and may
24       take quite a long time.  However once created, these indexes will allow
25       fast access for species to taxon id OR taxon id to species name
26       lookups.
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AUTHOR - Gabriel Valiente, reimplemented by Sendu Bala

29       Email valiente@lsi.upc.edu Email bix@sendu.me.uk
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33perl v5.12.0                      2010-04-29               BP_TAXONOMY2TREE(1)
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