1BP_TREE2PAG(1) User Contributed Perl Documentation BP_TREE2PAG(1)
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6 tree2pag - convert Bio::TreeIO parseable format trees to pagel format
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9 tree2pag -if nexus -i file.nexus > file.pag
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11 # OR pipe in through STDIN, and use newick format instead
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13 cat file.newick | tree2pag -if newick > file.nh
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15 # OR specify an output and input
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17 tree2pag -o file.pag -i file.newick
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20 Convert TreeIO parseable files into Pagel format tree files. Be warned
21 that pagel format only really supports a single tree per file so. Also
22 Pagel parsing is not yet available in bioperl.
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26perl v5.12.0 2010-04-29 BP_TREE2PAG(1)