1Bio::SeqIO::exp(3) User Contributed Perl Documentation Bio::SeqIO::exp(3)
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6 Bio::SeqIO::exp - exp trace sequence input/output stream
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9 Do not use this module directly. Use it via the Bio::SeqIO class.
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12 This object can transform Bio::Seq objects to and from exp trace files.
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15 Mailing Lists
16 User feedback is an integral part of the evolution of this and other
17 Bioperl modules. Send your comments and suggestions preferably to one
18 of the Bioperl mailing lists. Your participation is much appreciated.
19 bioperl-l@bioperl.org - General discussion
21 http://bioperl.org/wiki/Mailing_lists - About the mailing lists
22 Support
24 Please direct usage questions or support issues to the mailing list:
25 bioperl-l@bioperl.org
27 rather than to the module maintainer directly. Many experienced and
29 reponsive experts will be able look at the problem and quickly address
30 it. Please include a thorough description of the problem with code and
31 data examples if at all possible.
32 Reporting Bugs
34 Report bugs to the Bioperl bug tracking system to help us keep track
35 the bugs and their resolution. Bug reports can be submitted via the
36 web:
37 http://bugzilla.open-bio.org/
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41 Email: amackey@virginia.edu
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44 The rest of the documentation details each of the object methods.
45 Internal methods are usually preceded with a _
46 next_seq
48 Title : next_seq
49 Usage : $seq = $stream->next_seq()
50 Function: returns the next sequence in the stream
51 Returns : Bio::Seq::Quality object
52 Args : NONE
53 write_seq
55 Title : write_seq
56 Usage : $stream->write_seq(@seq)
57 Function: writes the $seq object into the stream
58 Returns : 1 for success and 0 for error
59 Args : Bio::Seq object
60perl v5.12.0 2010-04-29 Bio::SeqIO::exp(3)