1BP_MAKE_MRNA_PROTEIN(1)User Contributed Perl DocumentatioBnP_MAKE_MRNA_PROTEIN(1)
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NAME

6       make_mrna_protein - Convert an input mRNA/cDNA sequence into protein
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DESCRIPTION

9       Convert an input mRNA/cDNA sequence into protein using translate()
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11         -f/--frame           Specifies frame [0,1,2]
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13       One can also specify:
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15         -t/--terminator      Stop Codon character (defaults to '*')
16         -u/--unknown         Unknown Protein character (defaults to 'X')
17         -cds/--fullcds       Expected Full CDS (with start and Stop codon)
18         -throwOnError        Throw error if no Full CDS (defaults to 0)
19         -if/--format         Input format (defaults to FASTA/Pearson)
20         -of/--format         Output format (defaults to FASTA/Pearson)
21         -o/--output          Output Filename (defaults to STDOUT)
22         -i/--input           Input Filename (defaults to STDIN)
23         -ct/--codontable     Codon table to use (defaults to '1')
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25       See Bio::PrimarySeq for more information on codon tables and the
26       translate() method
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AUTHOR - Jason Stajich

29         Email jason-at-bioperl-dot-org
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33perl v5.12.0                      2010-04-29           BP_MAKE_MRNA_PROTEIN(1)
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