1BP_PROCESS_SGD(1)     User Contributed Perl Documentation    BP_PROCESS_SGD(1)
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NAME

6       process_sgd.pl - Massage SGD annotation flat files into a version
7       suitable for the Generic Genome Browser
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SYNOPSIS

10         % process_sgd.pl chromosomal_features.tab > yeast.gff
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DESCRIPTION

13       This script massages the SGD sequence annotation flat files located at
14       ftp://genome-ftp.stanford.edu/pub/yeast/data_dump/feature/chromosomal_features.tab
15       into a version of the GFF format suitable for display by the generic
16       genome browser.
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18       To use this script, get the SGD chromosomal_features.tab file from the
19       FTP site listed above, and run the following command:
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21         % process_sgd.pl chromosomal_features.tab > yeast.gff
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23       The yeast.gff file can then be loaded into a Bio::DB::GFF database
24       using the following command:
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26         % bulk_load_gff.pl -d <databasename> yeast.gff
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SEE ALSO

29       Bio::DB::GFF, bulk_load_gff.pl, load_gff.pl
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AUTHOR

32       Lincoln Stein, lstein@cshl.org
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34       Copyright (c) 2002 Cold Spring Harbor Laboratory
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36       This library is free software; you can redistribute it and/or modify it
37       under the same terms as Perl itself.  See DISCLAIMER.txt for
38       disclaimers of warranty.
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42perl v5.12.0                      2010-04-29                 BP_PROCESS_SGD(1)