1BP_SEARCH2BSML(1)     User Contributed Perl Documentation    BP_SEARCH2BSML(1)
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NAME

6       search2bsml - Turn SearchIO parseable reports(s) into a BSML report
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SYNOPSIS

9       Usage:
10         search2bsml [-o outputfile] [-f reportformat] [-i inputfilename]  OR
11       file1 file2 ..
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DESCRIPTION

14       This script will turn a protein Search report (BLASTP, FASTP, SSEARCH,
15       AXT, WABA, SIM4) into a BSML File.
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17       The options are:
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19          -i infilename        - (optional) inputfilename, will read
20                                 either ARGV files or from STDIN
21          -o filename          - the output filename [default STDOUT]
22          -f format            - search result format (blast, fasta,waba,axt)
23                                 (ssearch is fasta format). default is blast.
24          -h                   - this help menu
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26       Additionally specify the filenames you want to process on the command-
27       line.  If no files are specified then STDIN input is assumed.  You
28       specify this by doing: search2gff < file1 file2 file3
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AUTHOR

31       Jason Stajich, jason-at-bioperl-dot-org
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35perl v5.12.0                      2010-04-29                 BP_SEARCH2BSML(1)
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