1BP_SPLIT_SEQ(1) User Contributed Perl Documentation BP_SPLIT_SEQ(1)
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6 split_seq - splits a sequence into equal sized chunks with an optional
7 overlapping range
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10 split_seq -c 10000 [-o 1000] [-i] -f seq.in
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13 The script will split sequences into chunks
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15 Mandatory Options:
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17 -c Desired length of the resulting sequences.
18 -f Input file (must be FASTA format).
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20 Special Options:
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22 -o Overlapping range between the resulting sequences.
23 -i Create an index file with the resulting sequence files. This is
24 useful if you want to pass this list as input arguments into
25 another programs (i.e. CLUSTAL, HMMER, etc.).
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28 Mailing Lists
29 User feedback is an integral part of the evolution of this and other
30 Bioperl modules. Send your comments and suggestions preferably to the
31 Bioperl mailing list. Your participation is much appreciated.
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33 bioperl-l@bioperl.org - General discussion
34 http://bioperl.org/wiki/Mailing_lists - About the mailing lists
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36 Reporting Bugs
37 Report bugs to the Bioperl bug tracking system to help us keep track of
38 the bugs and their resolution. Bug reports can be submitted via the
39 web:
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41 http://bugzilla.open-bio.org/
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44 Ewan Birney E<lt>birney-at-ebi.ac.ukE<gt>
45 Mauricio Herrera Cuadra E<lt>mauricio at open-bio.orgE<gt>
46 (some enhancements)
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50perl v5.12.0 2010-04-29 BP_SPLIT_SEQ(1)