1Fsdb::Filter::dbfilevalUisdearteC(o3n)tributed Perl DocuFmsednbt:a:tFiiolnter::dbfilevalidate(3)
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NAME

6       dbfilevalidate - insure the source input is a well-formed Fsdb file
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SYNOPSIS

9           dbfilevalidate [-vc]
10

DESCRIPTION

12       Validates the input file to make sure it is a well-formed fsdb file.
13       If the file is well-formed, it outputs the whole file and exits with a
14       good exit code.  For invalid files, it exits with an error exit code
15       and embedded error messages in the stream as comments with "***" in
16       them.
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18       Currently this program checks for rows with missing or extra columns.
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OPTIONS

21       -v or --errors-only
22           Output only broken lines, not the whole thing.
23
24       -c or --correct
25           Correct errors, if possible.  Pad out rows with the empty value;
26           truncate rows with extra values.  If errors can be corrected the
27           program exits with a good return code.
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29       "-e E" or "--empty E"
30           give value E as the value for empty (null) records
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32       This module also supports the standard fsdb options:
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34       -d  Enable debugging output.
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36       -i or --input InputSource
37           Read from InputSource, typically a file name, or "-" for standard
38           input, or (if in Perl) a IO::Handle, Fsdb::IO or Fsdb::BoundedQueue
39           objects.
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41       -o or --output OutputDestination
42           Write to OutputDestination, typically a file name, or "-" for
43           standard output, or (if in Perl) a IO::Handle, Fsdb::IO or
44           Fsdb::BoundedQueue objects.
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46       --autorun or --noautorun
47           By default, programs process automatically, but Fsdb::Filter
48           objects in Perl do not run until you invoke the run() method.  The
49           "--(no)autorun" option controls that behavior within Perl.
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51       --help
52           Show help.
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54       --man
55           Show full manual.
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SAMPLE USAGE

58   Input:
59           #fsdb sid cid
60           1 10
61           2
62           1 12
63           2 12
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65   Command:
66           cat TEST/dbfilevalidate_ex.in | dbvalidate
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68   Output:
69           #fsdb sid cid
70           1 10
71           2
72           # *** line above is missing field cid.
73           1 12
74           2 12
75           #  | dbfilevalidate
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SEE ALSO

78       Fsdb.
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CLASS FUNCTIONS

81   new
82           $filter = new Fsdb::Filter::dbfilevalidate(@arguments);
83
84       Create a new dbfilevalidate object, taking command-line arguments.
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86   set_defaults
87           $filter->set_defaults();
88
89       Internal: set up defaults.
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91   parse_options
92           $filter->parse_options(@ARGV);
93
94       Internal: parse command-line arguments.
95
96   setup
97           $filter->setup();
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99       Internal: setup, parse headers.
100
101   run
102           $filter->run();
103
104       Internal: run over each rows.
105
106   finish
107           $filter->finish();
108
109       Internal: write trailer.
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112       Copyright (C) 1991-2008 by John Heidemann <johnh@isi.edu>
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114       This program is distributed under terms of the GNU general public
115       license, version 2.  See the file COPYING with the distribution for
116       details.
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120perl v5.28.1                      2016-01-04   Fsdb::Filter::dbfilevalidate(3)
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