1GMX-CONVERT-TPR(1) GROMACS GMX-CONVERT-TPR(1)
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6 gmx-convert-tpr - Make a modifed run-input file
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9 gmx convert-tpr [-s [<.tpr>]] [-n [<.ndx>]] [-o [<.tpr>]]
10 [-extend <real>] [-until <real>] [-nsteps <int>]
11 [-[no]zeroq]
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14 gmx convert-tpr can edit run input files in three ways.
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16 1. by modifying the number of steps in a run input file with options
17 -extend, -until or -nsteps (nsteps=-1 means unlimited number of steps)
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19 2. by creating a .tpx file for a subset of your original tpx file,
20 which is useful when you want to remove the solvent from your .tpx
21 file, or when you want to make e.g. a pure Calpha .tpx file. Note that
22 you may need to use -nsteps -1 (or similar) to get this to work. WARN‐
23 ING: this .tpx file is not fully functional.
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25 3. by setting the charges of a specified group to zero. This is useful
26 when doing free energy estimates using the LIE (Linear Interaction
27 Energy) method.
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30 Options to specify input files:
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32 -s [<.tpr>] (topol.tpr)
33 Portable xdr run input file
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35 -n [<.ndx>] (index.ndx) (Optional)
36 Index file
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38 Options to specify output files:
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40 -o [<.tpr>] (tprout.tpr)
41 Portable xdr run input file
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43 Other options:
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45 -extend <real> (0)
46 Extend runtime by this amount (ps)
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48 -until <real> (0)
49 Extend runtime until this ending time (ps)
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51 -nsteps <int> (0)
52 Change the number of steps
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54 -[no]zeroq (no)
55 Set the charges of a group (from the index) to zero
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58 gmx(1)
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60 More information about GROMACS is available at <‐
61 http://www.gromacs.org/>.
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64 2019, GROMACS development team
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692019.2 Apr 16, 2019 GMX-CONVERT-TPR(1)