1CSG_DENSITY(1)              General Commands Manual             CSG_DENSITY(1)
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NAME

6       csg_density - Part of the VOTCA package
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SYNOPSIS

11       csg_density [OPTIONS]
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13       csg_density [--help]
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DESCRIPTION

18       Calculates the mass density distribution along a box axis or radial
19       density profile from reference point
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OPTIONS

26       Allowed options:
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28         -h [ --help ]             display this help and exit
29         --verbose                 be loud and noisy
30         --verbose1                be very loud and noisy
31         -v [ --verbose2 ]         be extremly loud and noisy
32         --top arg                 atomistic topology file
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34       Mapping options:
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36         --cg arg                  [OPTIONAL] coarse graining mapping and bond
37                                 definitions
38                                   (xml-file). If no file is given, program
39       acts on
40                                 original trajectory
41         --map-ignore arg          list of molecules to ignore if mapping is
42       done
43                                 separated by ;
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45       Specific options::
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47         --type arg (=mass)      density type: mass or number
48         --axis arg (=r)         [x|y|z|r] density axis (r=spherical)
49         --step arg (=0.01)      spacing of density
50         --block-length arg        write blocks of this length, the averages
51       are
52                                 cleared after every write
53         --out arg               Output file
54         --rmax arg              rmax (default for [r] =min of all box
55       vectors/2, else
56                                 l )
57         --scale arg (=1)        scale factor for the density
58         --molname arg (=*)      molname
59         --filter arg (=*)       filter bead names
60         --ref arg               reference zero point
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62       Trajectory options:
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64         --trj arg                 atomistic trajectory file
65         --begin arg (=0)          skip frames before this time (only works
66       for
67                                 Gromacs files)
68         --first-frame arg (=0)    start with this frame
69         --nframes arg             process the given number of frames
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AUTHORS

73       Written and maintained by the VOTCA Development Team <devs@votca.org>
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78       Copyright 2009-2021 The VOTCA Development Team (http://www.votca.org)
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80       Licensed under the Apache License, Version 2.0 (the "License"); you may
81       not use this  file except in compliance with the License.  You may
82       obtain a copy of the License at
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84              http://www.apache.org/licenses/LICENSE-2.0
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86       Unless  required by applicable law or agreed to in writing, software
87       distributed under the License is distributed on an "AS IS" BASIS,
88       WITHOUT WARRANTIES OR CONDITIONS OF ANY  KIND, either  express  or
89       implied.   See  the  License  for  the  specific  language  governing
90       permissions and limitations under the License.
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95VOTCA Development Team      csg_density User Manual             CSG_DENSITY(1)
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