1CSG_FLUCTUATIONS(1)         General Commands Manual        CSG_FLUCTUATIONS(1)
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NAME

6       csg_fluctuations - Part of the VOTCA package
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SYNOPSIS

11       csg_fluctuations [OPTIONS]
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13       csg_fluctuations [--help]
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DESCRIPTION

18       calculate density fluctuations in subvolumes of the simulation
19       box.Subolumes can be either cubic slabs in dimensions (x|y|z) or
20       sphericalslabs with respect to either the center of box or a reference
21       molecule
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OPTIONS

28       Allowed options:
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30         -h [ --help ]                        display this help and exit
31         --verbose                            be loud and noisy
32         --verbose1                           be very loud and noisy
33         -v [ --verbose2 ]                    be extremly loud and noisy
34         --top arg                            atomistic topology file
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36       Fluctuation options:
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38         --filter arg (=*)                  filter molecule names
39         --rmax arg                         maximal distance to be considered
40         --rmin arg (=0)                    minimal distance to be considered
41         --refmol arg                       Reference molecule
42         --nbin arg (=100)                  Number of bins
43         --geometry arg                     (sphere|x|y|z) Take radial or x,
44       y, z
45                                            slabs from rmin to rmax
46         --outfile arg (=fluctuations.dat)  Output file
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48       Mapping options:
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50         --cg arg                             coarse graining mapping and bond
51                                            definitions (xml-file)
52         --map-ignore arg                     list of molecules to ignore
53       separated by
54                                            ;
55         --no-map                             disable mapping and act on
56       original
57                                            trajectory
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59       Trajectory options:
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61         --trj arg                            atomistic trajectory file
62         --begin arg (=0)                     skip frames before this time
63       (only works
64                                            for Gromacs files)
65         --first-frame arg (=0)               start with this frame
66         --nframes arg                        process the given number of
67       frames
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AUTHORS

71       Written and maintained by the VOTCA Development Team <devs@votca.org>
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76       Copyright 2009-2021 The VOTCA Development Team (http://www.votca.org)
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78       Licensed under the Apache License, Version 2.0 (the "License"); you may
79       not use this  file except in compliance with the License.  You may
80       obtain a copy of the License at
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82              http://www.apache.org/licenses/LICENSE-2.0
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84       Unless  required by applicable law or agreed to in writing, software
85       distributed under the License is distributed on an "AS IS" BASIS,
86       WITHOUT WARRANTIES OR CONDITIONS OF ANY  KIND, either  express  or
87       implied.   See  the  License  for  the  specific  language  governing
88       permissions and limitations under the License.
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93VOTCA Development Team    csg_fluctuations User Manual     CSG_FLUCTUATIONS(1)
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