1GMX-DUMP(1)                         GROMACS                        GMX-DUMP(1)
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NAME

6       gmx-dump - Make binary files human readable
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SYNOPSIS

9          gmx dump [-s <.tpr>] [-f <.xtc/.trr/...>] [-e <.edr>] [-cp <.cpt>]
10                   [-p <.top>] [-mtx <.mtx>] [-om <.mdp>] [-[no]nr]
11                   [-[no]param] [-[no]sys] [-[no]orgir]
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DESCRIPTION

14       gmx  dump  reads a run input file (.tpr), a trajectory (.trr/.xtc/tng),
15       an energy file (.edr), a checkpoint file (.cpt) or topology file (.top)
16       and  prints that to standard output in a readable format.  This program
17       is essential for checking your run input file in case of problems.
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OPTIONS

20       Options to specify input files:
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22       -s <.tpr> (Optional)
23              Run input file to dump
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25       -f <.xtc/.trr/...> (Optional)
26              Trajectory file to dump: xtc trr cpt gro g96 pdb tng
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28       -e <.edr> (Optional)
29              Energy file to dump
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31       -cp <.cpt> (Optional)
32              Checkpoint file to dump
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34       -p <.top> (Optional)
35              Topology file to dump
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37       -mtx <.mtx> (Optional)
38              Hessian matrix to dump
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40       Options to specify output files:
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42       -om <.mdp> (Optional)
43              grompp input file from run input file
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45       Other options:
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47       -[no]nr (yes)
48              Show index numbers in output (leaving them out makes  comparison
49              easier, but creates a useless topology)
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51       -[no]param (no)
52              Show  parameters  for  each  bonded  interaction  (for comparing
53              dumps, it is useful to combine this with -nonr)
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55       -[no]sys (no)
56              List the atoms and bonded interactions for the whole system  in‐
57              stead of for each molecule type
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59       -[no]orgir (no)
60              Show  input parameters from tpr as they were written by the ver‐
61              sion that produced the file, instead of how the current  version
62              reads them
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KNOWN ISSUES

65       • The .mdp file produced by -om can not be read by grompp.
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SEE ALSO

68       gmx(1)
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70       More     information    about    GROMACS    is    available    at    <‐
71       http://www.gromacs.org/>.
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74       2022, GROMACS development team
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792022.3                           Sep 02, 2022                      GMX-DUMP(1)
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