1BOWTIE2-INSPECT(1)               User Commands              BOWTIE2-INSPECT(1)
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NAME

6       bowtie2-inspect - manual page for bowtie2-inspect 2.5.1
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SYNOPSIS

9       bowtie2-inspect [options]* <bt2_base>
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DESCRIPTION

12       Bowtie   2   version   2.5.1   by   Ben  Langmead  (langmea@cs.jhu.edu,
13       www.cs.jhu.edu/~langmea)
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15       <bt2_base>
16              bt2 filename minus trailing .1.bt2/.2.bt2
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18              By default, prints FASTA records of the indexed  nucleotide  se‐
19              quences  to standard out.  With -n, just prints names.  With -s,
20              just prints a summary of the index parameters and sequences.
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OPTIONS

23       --large-index
24              force inspection of the 'large' index, even if a 'small' one  is
25              present.
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27       --debug
28              use the debug binary; slower, assertions enabled
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30       --sanitized
31              use sanitized binary; slower, uses ASan and/or UBSan
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33       --verbose
34              log the issued command
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36       -a/--across <int>
37              Number of characters across in FASTA output (default: 60)
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39       -n/--names
40              Print reference sequence names only
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42       -s/--summary
43              Print summary incl. ref names, lengths, index properties
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45       -o/--output
46              Save output to filename (default stdout)
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48       -v/--verbose
49              Verbose output (for debugging)
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51       -h/--help
52              print this and message quit
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56bowtie2-inspect 2.5.1              July 2023                BOWTIE2-INSPECT(1)