1BP_CHAOS_PLOT(1) User Contributed Perl Documentation BP_CHAOS_PLOT(1)
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6 chaos_plot - a chaos plot from DNA and RNA sequences
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9 chaos_plot.pl -i/--input=INPUTFILE -f/--format=SEQFORMAT
10 -o/--output=OUTPUTFILE -g/--graphics=GRAPHIC FORMAT
11 -w/--width=WIGHT -h/--height=HEIGHT
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14 This scripts generates image files using GD image library to visualize
15 nucleotide sequences using chaos plot.
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18 Valid graphics formats are currently gd, gd2, png, wbmp, jpeg and gif.
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20 The default size of the image file is 600x400.
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22 The sequence input can be provided using any of the three methods:
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24 unnamed argument
25 chaos_plot filename
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27 named argument
28 chaos_plot -i filename
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30 standard input
31 chaos_plot < filename
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34 Mailing Lists
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36 User feedback is an integral part of the evolution of this and other
37 Bioperl modules. Send your comments and suggestions preferably to the
38 Bioperl mailing list. Your participation is much appreciated.
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40 bioperl-l@bioperl.org - General discussion
41 http://bioperl.org/wiki/Mailing_lists - About the mailing lists
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43 Reporting Bugs
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45 Report bugs to the Bioperl bug tracking system to help us keep track of
46 the bugs and their resolution. Bug reports can be submitted via the
47 web:
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49 http://bugzilla.open-bio.org/
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52 Email jason@bioperl.org
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55 This code is based on EMBOSS C code for chaos.c by Ian Longden.
56 Included are documentation from EMBOSS code:
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58 Chaos produces a chaos plot. The original application is part of the
59 ACEDB genome database package, written by ** Richard Durbin (MRC LMB,
60 UK) rd@mrc-lmba.cam.ac.uk, and Jean Thierry-Mieg (CRBM du CNRS, France)
61 mieg@crbm1.cnusc.fr
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65perl v5.8.8 2007-05-07 BP_CHAOS_PLOT(1)