1BP_COMPOSITE_LD(1) User Contributed Perl Documentation BP_COMPOSITE_LD(1)
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6 composite_LD -i filename.prettybase.txt --sortbyld > outfile
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9 composite_LD -i filename.prettybase [-o out.LD] [-f prettybase/csv] [--sortbyld] [--noconvertindels]
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11 DESCRIPTION
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13 This a script which allows an easy way to calculate composite LD.
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15 OPTIONS
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17 -i or --in filename
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19 -f or --format genotype format (prettybase or CSV)
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21 --sortbyld To see data sorted by LD instead of just all the
22 site1/site2 pair LD values.
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24 -o or --out output filename, otherwise will print to STDOUT
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26 --noconvert (applicable for prettybase format file only)
27 if specified will NOT attempt to convert indel
28 states to 'I' and delete states ('-') to 'D'.
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30 -h or --help see this documentation
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32 AUTHOR Jason Stajich, Matthew Hahn
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34 For more information contact:
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36 Matthew Hahn, <matthew.hahn-at-duke.edu> Jason Stajich <jason-at-biop‐
37 erl-dot-org>
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41perl v5.8.8 2007-05-07 BP_COMPOSITE_LD(1)