1BP_DBSPLIT(1) User Contributed Perl Documentation BP_DBSPLIT(1)
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6 dbsplit - script to split an input set of database(s) into smaller
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10 dbsplit.PLS --size 50 [-i inputfile] [-if inputformat] [-of outputformat]
11 [--prefix outputprefix] [ < file1 file 2 OR file1 file2]
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14 This script will take as input a list of filenames or a single file or
15 from STDIN a sequence database and split the database into separate
16 files of X numbers of sequences. You specify X with the "--size/-s"
17 parameter. The input and output sequence format is any that is sup‐
18 ported by bioperl (fasta,embl,genbank,gcg, swissprot, etc).
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20 You can specify the input data either as a single file with -i file‐
21 name, or as a single file as an argument like
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23 % dbsplit file1 file2
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25 or as a list of sequence data with
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27 % cat file1 file2 file3 ⎪ dbsplit
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29 You'll want to use the "--prefix" to specify what the output prefix
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33 Mailing Lists
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35 User feedback is an integral part of the evolution of this and other
36 Bioperl modules. Send your comments and suggestions preferably to the
37 Bioperl mailing list. Your participation is much appreciated.
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39 bioperl-l@bioperl.org - General discussion
40 http://bioperl.org/wiki/Mailing_lists - About the mailing lists
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42 Reporting Bugs
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44 Report bugs to the Bioperl bug tracking system to help us keep track of
45 the bugs and their resolution. Bug reports can be submitted via the
46 web:
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48 http://bugzilla.open-bio.org/
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51 Jason Stajich, jason-at-bioperl-dot-org
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55perl v5.8.8 2007-05-07 BP_DBSPLIT(1)