1BP_GCCALC(1)          User Contributed Perl Documentation         BP_GCCALC(1)
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NAME

6       gccalc - GC content of nucleotide sequences
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SYNOPSIS

9         gccalc [-f/--format FORMAT] [-h/--help] filename
10         or
11         gccalc [-f/--format FORMAT] < filename
12         or
13         gccalc [-f/--format FORMAT] -i filename
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DESCRIPTION

16       This scripts prints out the GC content for every nucleotide sequence
17       from the input file.
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OPTIONS

20       The default sequence format is fasta.
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22       The sequence input can be provided using any of the three methods:
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24       unnamed argument
25            gccalc filename
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27       named argument
28            gccalc -i filename
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30       standard input
31            gccalc < filename
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FEEDBACK

34       Mailing Lists
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36       User feedback is an integral part of the evolution of this and other
37       Bioperl modules. Send your comments and suggestions preferably to the
38       Bioperl mailing list.  Your participation is much appreciated.
39
40         bioperl-l@bioperl.org                  - General discussion
41         http://bioperl.org/wiki/Mailing_lists  - About the mailing lists
42
43       Reporting Bugs
44
45       Report bugs to the Bioperl bug tracking system to help us keep track of
46       the bugs and their resolution. Bug reports can be submitted via the
47       web:
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49         http://bugzilla.open-bio.org/
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AUTHOR - Jason Stajich

52       Email jason@bioperl.org
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HISTORY

55       Based on script code (see bottom) submitted by cckim@stanford.edu
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57       Submitted as part of bioperl script project 2001/08/06
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61perl v5.8.8                       2007-05-07                      BP_GCCALC(1)