1BP_HETEROGENEITY_TEST(1U)ser Contributed Perl DocumentatiBoPn_HETEROGENEITY_TEST(1)
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NAME

6       heterogeneity_test - a test for distinguishing between selection and
7       population expansion.
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SYNOPSIS

10       heterogenetity_test -mut_1/--mutsyn synonymous_mut_count -mut_2/--mut‐
11       non nonsyn_mut_count -s/--smaplesize sample_size [-i/--iterations iter‐
12       ations] [-o/--observed observed_D] [-v/--verbose] [--silent ]
13       [-m/--method tajimaD or fuD] [--precision]
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15       DESCRIPTION
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17       This is an implementation of the Heterogenetity test as described in
18       Hahn MW, Rausher MD, and Cunningham CW. 2002. Genetics 161(1):11-20.
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20       OPTIONS
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22        Options in brackets above are optional
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24        -s or --samplesize samplesize
25        -mut_1 or --mutsyn synonymous mutation count
26        -mut_2 or --mutnon nonsynonmous mutation count
27        -i or --iterations number of iterations
28        -o or --observed   observed D
29        -m or --method     tajimaD or fuD  for Tajima's D or Fu and Li's D
30        -v or --verbose    print out extra verbose messages
31        --silent           Be extra quiet
32        --precision        Level of precision - specify the number of digits
33                          (default 4)
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35       AUTHOR Matthew Hahn <matthew.hahn-at-duke.edu>
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37       For more information contact:
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39       Matthew Hahn, <matthew.hahn-at-duke.edu> Jason Stajich <jason-at-biop‐
40       erl-dot-org>
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44perl v5.8.8                       2007-05-07          BP_HETEROGENEITY_TEST(1)
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