1BP_HETEROGENEITY_TEST(1U)ser Contributed Perl DocumentatiBoPn_HETEROGENEITY_TEST(1)
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6 heterogeneity_test - a test for distinguishing between selection and
7 population expansion.
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10 heterogenetity_test -mut_1/--mutsyn synonymous_mut_count -mut_2/--mut‐
11 non nonsyn_mut_count -s/--smaplesize sample_size [-i/--iterations iter‐
12 ations] [-o/--observed observed_D] [-v/--verbose] [--silent ]
13 [-m/--method tajimaD or fuD] [--precision]
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15 DESCRIPTION
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17 This is an implementation of the Heterogenetity test as described in
18 Hahn MW, Rausher MD, and Cunningham CW. 2002. Genetics 161(1):11-20.
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20 OPTIONS
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22 Options in brackets above are optional
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24 -s or --samplesize samplesize
25 -mut_1 or --mutsyn synonymous mutation count
26 -mut_2 or --mutnon nonsynonmous mutation count
27 -i or --iterations number of iterations
28 -o or --observed observed D
29 -m or --method tajimaD or fuD for Tajima's D or Fu and Li's D
30 -v or --verbose print out extra verbose messages
31 --silent Be extra quiet
32 --precision Level of precision - specify the number of digits
33 (default 4)
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35 AUTHOR Matthew Hahn <matthew.hahn-at-duke.edu>
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37 For more information contact:
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39 Matthew Hahn, <matthew.hahn-at-duke.edu> Jason Stajich <jason-at-biop‐
40 erl-dot-org>
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44perl v5.8.8 2007-05-07 BP_HETEROGENEITY_TEST(1)