1BP_LOCAL_TAXONOMYDB_QUEURsYe(r1)Contributed Perl DocumenBtPa_tLiOoCnAL_TAXONOMYDB_QUERY(1)
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NAME

6       local_taxonomydb_query - query a local TaxonomyDB for species or tax‐
7       onid
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DESCRIPTION

10       This script provides an example implementation of access to a local
11       Taxonomy database implemented with Berkeley DB (DB_File module is
12       needed).
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14       Usage:
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16        local_taxonomydb_query.PLS: [-v] --nodes nodes.dmp --names names.dmp "Genus1 species1" "Genus2 species2"
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18       Providing the nodes.dmp and names.dmp files from the NCBI Taxonomy dump
19       (see Bio::DB::Taxonomy::flatfile for more info) is only necessary on
20       the first time running.  This will create the local indexes and may
21       take quite a long time.  However once created, these indexes will allow
22       fast access for species to taxon id OR taxon id to species name
23       lookups.
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27perl v5.8.8                       2007-05-07      BP_LOCAL_TAXONOMYDB_QUERY(1)
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