1BP_NRDB(1)            User Contributed Perl Documentation           BP_NRDB(1)
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NAME

6       bp_nrdb.PLS - a script to emulate Warren Gish's nrdb, make a unique
7       sequence database from a set of input databases
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SYNOPSIS

10       Usage:
11         bp_nrdb.PLS [options] file1 file2 file3
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13       Alternative usage
14         bp_nrdb.PLS -p [options] file1 id1 file2 id2 file3 id3
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DESCRIPTION

17       This script will create a unique database of sequences (quasi-nonredun‐
18       dant).  The options are:
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20          -o filename          - the filename the db is written (STDOUT by default)
21          -a filename          - the filename to append the db to
22          -l#                  - minimum required sequence length
23          -i                   - do not check for duplicates
24          -n#                  - max number of descriptions to report per seq
25          -d#                  - delimiter to use between consecutive descriptions
26          -p                   - use database id prefixes from command line
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AUTHOR

29       Jason Stajich, jason-at-bioperl-dot-org
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33perl v5.8.8                       2007-05-07                        BP_NRDB(1)