1BP_PARSE_HMMSEARCH(1) User Contributed Perl DocumentationBP_PARSE_HMMSEARCH(1)
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NAME

6       parse_hmmsearch - parse single/multiple HMMSEARCH results file(s) with
7                         different output options
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SYNOPSIS

10       parse_hmmsearch [--po] [--ps] -s hmmsearch_file
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12       parse_hmmsearch [--po] [--ps] -m index_file
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DESCRIPTION

15       Mandatory Options:
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17         -s  HMMSEARCH file to parse.
18         -m  INDEX file that contains a list of HMMSEARCH files for multiple
19             parsing.
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21       Special Options:
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23         --po    Print only the hits that have positive scores.
24         --ps    Print the total of positive scores found.
25         --help  Show this documentation.
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FEEDBACK

28       Mailing Lists
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30       User feedback is an integral part of the evolution of this and other
31       Bioperl modules. Send your comments and suggestions preferably to the
32       Bioperl mailing list. Your participation is much appreciated.
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34         bioperl-l@bioperl.org                  - General discussion
35         http://bioperl.org/wiki/Mailing_lists  - About the mailing lists
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37       Reporting Bugs
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39       Report bugs to the Bioperl bug tracking system to help us keep track of
40       the bugs and their resolution. Bug reports can be submitted via the
41       web:
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43         http://bugzilla.open-bio.org/
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AUTHOR

46         Mauricio Herrera Cuadra <arareko-at-campus.iztacala.unam.mx>
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50perl v5.8.8                       2007-05-07             BP_PARSE_HMMSEARCH(1)