1BP_RUN_NEIGHBOR(1)    User Contributed Perl Documentation   BP_RUN_NEIGHBOR(1)
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NAME

6       run_neighbor - run Phylip's 'neighbor' program through Bioperl
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SYNOPSIS

9       run_neighbor [-i inputfile] [-o outfilename]
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DESCRIPTION

12       Provide an matrix file to run neighbor on.  File should be named of the
13       forma file.matrix or file.protdist (the ending doesn't matter, but the
14       program expects a file in the form of (\S+)\.(\S+).
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16       This will run the application 'neighbor' to build a Neighbor-Joining
17       tree from a protein distance matrix.
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AUTHOR

20       Jason Stajich, jason-AT-open-bio-DOT-org
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24perl v5.8.8                       2007-04-19                BP_RUN_NEIGHBOR(1)
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