1BP_SEQRET(1)          User Contributed Perl Documentation         BP_SEQRET(1)
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NAME

6       bp_seqret - bioperl implementation of sequence fetch from local db
7       (like EMBOSS seqret)
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USAGE

10       bp_seqret [-f/--format outputformat] [-o/--out/--outfile outfile]
11       [-d/--db dbname] [-i/--id/-s/--seqname seqname1]
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13       Example usage:
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15          bp_seqret -f fasta -db db.fa -i seq1 -i seq2 > output.fas
16          bp_seqret db.fa:seq1 output.fas
17          bp_seqret db.fa:seq1 -o output.fas
18          bp_seqret -db db.fa -o output.fas seq1 seq2 seq3
19          bp_seqret -db db.fa seq1 seq2 seq3 output.fas
20          bp_seqret -db db.fa seq1 seq2 seq3 - > output.fas
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22       The DB is expected to be a Fasta formatted sequence file with multiple
23       sequences.
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25       Output format is Fasta by default.
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27       If no output filename is provided then output is written to STDOUT.
28       Providing '-' as the output filename will accomplish the same thing.
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AUTHOR

31       Jason Stajich jason_AT_bioperl-dot-org
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35perl v5.8.8                       2007-05-07                      BP_SEQRET(1)
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