1BP_TAXONOMY2TREE(1)   User Contributed Perl Documentation  BP_TAXONOMY2TREE(1)
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NAME

6       taxonomy2tree - Building a taxonomic tree based on the full lineages of
7       a set of species names
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DESCRIPTION

10       taxonomy2tree.PLS: -s Orangutan -s Gorilla -s Chimpanzee -s Human tax‐
11       onomy2tree.PLS: -s Orangutan -s Gorilla -s Chimpanzee -s "Homo Sapiens"
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13       Can also provide -d to specific the directory to store index files in,
14       -o to specific the location of your nodes file, and -a for the names
15       file.  Or the option -e to use the web-based entrez taxonomy database
16       if you don't have the flatfiles installed.
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18       This script requires that the bioperl-run pkg be also installed.
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20       Providing the nodes.dmp and names.dmp files from the NCBI Taxonomy dump
21       (see Bio::DB::Taxonomy::flatfile for more info) is only necessary on
22       the first time running.  This will create the local indexes and may
23       take quite a long time.  However once created, these indexes will allow
24       fast access for species to taxon id OR taxon id to species name
25       lookups.
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AUTHOR - Gabriel Valiente, reimplemented by Sendu Bala

28       Email valiente@lsi.upc.edu Email bix@sendu.me.uk
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32perl v5.8.8                       2007-05-07               BP_TAXONOMY2TREE(1)