1Ace::Graphics::Glyph::sUesgemrenCtosn(t3r)ibuted Perl DoAccuem:e:nGtraatpihoincs::Glyph::segments(3)
2
3
4

NAME

6       Ace::Graphics::Glyph::segments - The "discontinuous segments" glyph
7

SYNOPSIS

9         See L<Ace::Graphics::Panel> and L<Ace::Graphics::Glyph>.
10

DESCRIPTION

12       This glyph draws a sequence feature that consists of multiple discon‐
13       tinuous segments, such as the exons on a transcript or a gapped align‐
14       ment.  The representation is a series of filled rectangles connected by
15       line segments.
16
17       The features passed to it must either respond to the Bio::SequenceFea‐
18       tureI-style subSeqFeatures() method, or the AcePerl/Das-style seg‐
19       ments() or merged_segments() methods.
20
21       OPTIONS
22
23       In addition to the common options, this glyph recognizes the
24       b<-stranded> argument.  If b<-stranded> is true and the feature is an
25       alignment (has the target() method) then the glyph will draw little
26       arrows in the segment boxes to indicate the direction of the alignment.
27

BUGS

29       Please report them.
30

SEE ALSO

32       Ace::Sequence, Ace::Sequence::Feature, Ace::Graphics::Panel,
33       Ace::Graphics::Track, Ace::Graphics::Glyph::anchored_arrow, Ace::Graph‐
34       ics::Glyph::arrow, Ace::Graphics::Glyph::box, Ace::Graph‐
35       ics::Glyph::primers, Ace::Graphics::Glyph::segments, Ace::Graph‐
36       ics::Glyph::toomany, Ace::Graphics::Glyph::transcript,
37

AUTHOR

39       Lincoln Stein <lstein@cshl.org>.
40
41       Copyright (c) 2001 Cold Spring Harbor Laboratory
42
43       This library is free software; you can redistribute it and/or modify it
44       under the same terms as Perl itself.  See DISCLAIMER.txt for dis‐
45       claimers of warranty.
46
47
48
49perl v5.8.8                       2001-02-20 Ace::Graphics::Glyph::segments(3)
Impressum