1BP_MAKE_MRNA_PROTEIN(1)User Contributed Perl DocumentatioBnP_MAKE_MRNA_PROTEIN(1)
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6 make_mrna_protein - Convert an input mRNA/cDNA sequence into protein
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9 Convert an input mRNA/cDNA sequence into protein using translate()
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11 -f/--frame Specifies frame [0,1,2]
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13 One can also specify:
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15 -t/--terminator Stop Codon character (defaults to '*')
16 -u/--unknown Unknown Protein character (defaults to 'X')
17 -cds/--fullcds Expected Full CDS (with start and Stop codon)
18 -throwOnError Throw error if no Full CDS (defaults to 0)
19 -if/--format Input format (defaults to FASTA/Pearson)
20 -of/--format Output format (defaults to FASTA/Pearson)
21 -o/--output Output Filename (defaults to STDOUT)
22 -i/--input Input Filename (defaults to STDIN)
23 -ct/--codontable Codon table to use (defaults to '1')
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25 See Bio::PrimarySeq for more information on codon tables and the
26 translate() method
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29 Email jason-at-bioperl-dot-org
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33perl v5.12.0 2010-04-29 BP_MAKE_MRNA_PROTEIN(1)