1BP_MAKE_MRNA_PROTEIN(1)User Contributed Perl DocumentatioBnP_MAKE_MRNA_PROTEIN(1)
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DESCRIPTION

6       Convert an input mRNA/cDNA sequence into protein using translate()
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8         -f/--frame           Specifies frame [0,1,2]
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10       One can also specify:
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12         -t/--terminator      Stop Codon character (defaults to '*')
13         -u/--unknown         Unknown Protein character (defaults to 'X')
14         -cds/--fullcds       Expected Full CDS (with start and Stop codon)
15         -throwOnError        Throw error if no Full CDS (defaults to 0)
16         -if/--format         Input format (defaults to FASTA/Pearson)
17         -of/--format         Output format (defaults to FASTA/Pearson)
18         -o/--output          Output Filename (defaults to STDOUT)
19         -i/--input           Input Filename (defaults to STDIN)
20         -ct/--codontable     Codon table to use (defaults to '1')
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22       See Bio::PrimarySeq for more information on codon tables and the trans‐
23       late() method
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AUTHOR - Jason Stajich

26         Email jason-at-bioperl-dot-org
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30perl v5.8.8                       2007-05-07           BP_MAKE_MRNA_PROTEIN(1)
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