1csg_map(1)                  General Commands Manual                 csg_map(1)
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NAME

6       csg_map - Part of the VOTCA package
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SYNOPSIS

10       csg_map [OPTION] [OPTIONPARAMETERS]
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DESCRIPTION

14       Map  a  reference trajectory to a coarse-grained trajectory.  This pro‐
15       gram can be used to map a whole trajectory or to create an initial con‐
16       figuration for a coarse-grained run only.
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19       Please visit the program site at __http://www.votca.org__.
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OPTIONS

23       Allowed options:
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26       -h [ --help ]
27              produce this help message
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29       --top arg
30              atomistic topology file
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32       --out arg
33              output file for coarse-grained trajectory
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36       Mapping options:
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39       --cg arg
40              coarse graining mapping definitions (xml-file)
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42       --map-ignore arg
43              list of molecules to ignore separated by ;
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45       --no-map
46              disable mapping and act on original trajectory
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49       Trajectory options:
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52       --trj arg
53              atomistic trajectory file
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55       --begin arg (=0)
56              skip frames before this time
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58       --first-frame arg (=0)
59              start with this frame
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61       --nframes arg
62              process the given number of frames
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AUTHORS

66       Written and maintained by the VOTCA Development Team <devs@votca.org>
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69       This  Manual  Page  was converted from t2t format to the this format by
70       txt2tags (http://txt2tags.org) !   The  t2t  file  was  extracted  from
71       'csg_map --help' by help2t2t (version 1.2.1 )
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75       Copyright 2009-2011 The VOTCA Development Team (http://www.votca.org)
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78       Licensed under the Apache License, Version 2.0 (the "License"); you may
79       not use this file except in  compliance  with  the  License.   You  may
80       obtain a copy of the License at
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83           http://www.apache.org/licenses/LICENSE-2.0
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86       Unless  required  by  applicable  law or agreed to in writing, software
87       distributed under the License is distributed on an "AS IS" BASIS, WITH‐
88       OUT  WARRANTIES  OR  CONDITIONS OF ANY KIND, either express or implied.
89       See the License for the specific  language  governing  permissions  and
90       limitations under the License.
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97Version: 1.2.1           Thu Aug 25 20:00:26 UTC 2011               csg_map(1)
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