1BP_LOCAL_TAXONOMYDB_QUEURsYe(r1)Contributed Perl DocumenBtPa_tLiOoCnAL_TAXONOMYDB_QUERY(1)
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6 local_taxonomydb_query - query a local TaxonomyDB for species or tax‐
7 onid
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10 This script provides an example implementation of access to a local
11 Taxonomy database implemented with Berkeley DB (DB_File module is
12 needed).
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14 Usage:
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16 local_taxonomydb_query.PLS: [-v] --nodes nodes.dmp --names names.dmp "Genus1 species1" "Genus2 species2"
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18 Providing the nodes.dmp and names.dmp files from the NCBI Taxonomy dump
19 (see Bio::DB::Taxonomy::flatfile for more info) is only necessary on
20 the first time running. This will create the local indexes and may
21 take quite a long time. However once created, these indexes will allow
22 fast access for species to taxon id OR taxon id to species name
23 lookups.
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27perl v5.8.8 2007-05-07 BP_LOCAL_TAXONOMYDB_QUERY(1)