1BP_MULTI_HMMSEARCH(1) User Contributed Perl DocumentationBP_MULTI_HMMSEARCH(1)
2
3
4
6 multi_hmmsearch - perform a hmmsearch into multiple FASTA files using
7 an INDEX file
8
10 multi_hmmsearch -p hmm_file [-i] -f index_file
11
13 Not technically a Bio::Tools::Run script as this doesn't use any
14 Bioperl or Bioperl-run components but it's useful.
15
16 Mandatory Options:
17 -p HMM profile to use for the search.
18 -f INDEX file that contains a list of FASTA files for the multiple
19 search.
20
21 Special Options:
22 -i Create a new index file with the resulting hmms files. This is
23 useful if you want to pass this list as input arguments into
24 another programs.
25 -h Show this documentation.
26
28 Mailing Lists
29 User feedback is an integral part of the evolution of this and other
30 Bioperl modules. Send your comments and suggestions preferably to the
31 Bioperl mailing list. Your participation is much appreciated.
32
33 bioperl-l@bioperl.org - General discussion
34 http://bioperl.org/wiki/Mailing_lists - About the mailing lists
35
36 Reporting Bugs
37 Report bugs to the Bioperl bug tracking system to help us keep track of
38 the bugs and their resolution. Bug reports can be submitted via the
39 web:
40
41 http://bugzilla.open-bio.org/
42
44 Mauricio Herrera Cuadra <arareko-at-campus.iztacala.unam.mx>
45
46
47
48perl v5.12.0 2010-04-29 BP_MULTI_HMMSEARCH(1)