1BP_MULTI_HMMSEARCH(1) User Contributed Perl DocumentationBP_MULTI_HMMSEARCH(1)
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NAME

6       multi_hmmsearch - perform a hmmsearch into multiple FASTA files using
7                         an INDEX file
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SYNOPSIS

10       multi_hmmsearch -p hmm_file [-i] -f index_file
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DESCRIPTION

13       Not technically a Bio::Tools::Run script as this doesn't use any Biop‐
14       erl or Bioperl-run components but it's useful.
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16       Mandatory Options:
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18         -p  HMM profile to use for the search.
19         -f  INDEX file that contains a list of FASTA files for the multiple
20             search.
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22       Special Options:
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24         -i  Create a new index file with the resulting hmms files. This is
25             useful if you want to pass this list as input arguments into
26             another programs.
27         -h  Show this documentation.
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FEEDBACK

30       Mailing Lists
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32       User feedback is an integral part of the evolution of this and other
33       Bioperl modules. Send your comments and suggestions preferably to the
34       Bioperl mailing list. Your participation is much appreciated.
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36         bioperl-l@bioperl.org                  - General discussion
37         http://bioperl.org/wiki/Mailing_lists  - About the mailing lists
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39       Reporting Bugs
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41       Report bugs to the Bioperl bug tracking system to help us keep track of
42       the bugs and their resolution. Bug reports can be submitted via the
43       web:
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45         http://bugzilla.open-bio.org/
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AUTHOR

48         Mauricio Herrera Cuadra <arareko-at-campus.iztacala.unam.mx>
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52perl v5.8.8                       2007-04-19             BP_MULTI_HMMSEARCH(1)