1g_rama(1)                 GROMACS suite, VERSION 4.5                 g_rama(1)
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NAME

6       g_rama - computes Ramachandran plots
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8       VERSION 4.5
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SYNOPSIS

11       g_rama  -f  traj.xtc -s topol.tpr -o rama.xvg -[no]h -[no]version -nice
12       int -b time -e time -dt time -[no]w -xvg enum
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DESCRIPTION

15       g_rama selects the Phi/Psi dihedral  combinations  from  your  topology
16       file and computes these as a function of time.  Using simple Unix tools
17       such as  grep you can select out specific residues.
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FILES

20       -f traj.xtc Input
21        Trajectory: xtc trr trj gro g96 pdb cpt
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23       -s topol.tpr Input
24        Run input file: tpr tpb tpa
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26       -o rama.xvg Output
27        xvgr/xmgr file
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OTHER OPTIONS

31       -[no]hno
32        Print help info and quit
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34       -[no]versionno
35        Print version info and quit
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37       -nice int 19
38        Set the nicelevel
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40       -b time 0
41        First frame (ps) to read from trajectory
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43       -e time 0
44        Last frame (ps) to read from trajectory
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46       -dt time 0
47        Only use frame when t MOD dt = first time (ps)
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49       -[no]wno
50        View output xvg, xpm, eps and pdb files
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52       -xvg enum xmgrace
53        xvg plot formatting:  xmgrace,  xmgr or  none
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SEE ALSO

57       gromacs(7)
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59       More  information  about  GROMACS  is  available  at   <http://www.gro‐
60       macs.org/>.
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64                                Thu 26 Aug 2010                      g_rama(1)
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