1gdcmgendir(1) GDCM gdcmgendir(1)
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6 gdcmgendir - Tool to generate a DICOMDIR file from a File-Set.
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9 gdcmgendir [options] file-in file-out
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13 file-in DICOM input filename
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15 file-out DICOM output filename
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18 Parameters
19 OPTIONS
20 -i --input DICOM filename or directory
21 -o --output DICOM filename or directory
22 -r --recursive recursive.
23 --descriptor descriptor.
24 --root-uid Root UID.
25 --resources-path Resources path.
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27 general options
28 -h --help
29 print this help text and exit
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31 -v --version
32 print version information and exit
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34 -V --verbose
35 verbose mode (warning+error).
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37 -W --warning
38 warning mode, print warning information
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40 -E --error
41 error mode, print error information
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43 -D --debug
44 debug mode, print debug information
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46 environment variable
47 GDCM_ROOT_UID Root UID
48 GDCM_RESOURCES_PATH path pointing to resources files (Part3.xml, ...)
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52 One may have to run some preliminary steps in order to get gdcmgendir
53 to generate the DICOMDIR file. Namely two steps:
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55 · Batch renaming of the DICOM filename into something compatible with
56 ISO 9660 filename convention
57 · Convert all DICOM file into the Explicit VR Little Endian
58 Uncompressed (1.2.840.10008.1.2.1)
59 Step 1. can be solved in a numerous way. Eg. on UNIX environment this
60 could either be solved using the mkisofs command line tool. filename
61 should not contains any extension since the VR CS does not allow for
62 the '.' character. Only upper case, digit 0-9, the space ' ' and the
63 underscore '_' character are valid in VR CS, with a maximum of 8 bytes.
64 Another simple tool that can be handy is 'rename' in conjunction with
65 'basename'.
66 Step 2. can simply be achieved using the gdcmconv command line tool:
67 $ for i in `ls IMG*`; do gdcmconv --raw --force $i /tmp/out/$i; done
69 gdcmconv(1), gdcmanon(1), rename(1)
71 Copyright (c) 2006-2010 Mathieu Malaterre
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75Version 2.0.16 Tue Jul 26 2011 gdcmgendir(1)