1Bio::Tools::AlignFactorUys(e3r)Contributed Perl DocumentBaitoi:o:nTools::AlignFactory(3)
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NAME

6       Bio::Tools::AlignFactory - Base object for alignment factories
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SYNOPSIS

9       You wont be using this as an object, but using a dervied class like
10       Bio::Tools::pSW
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DESCRIPTION

13       Holds common Alignment Factory attributes in place
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CONTACT

16       http://bio.perl.org/ or birney@sanger.ac.uk
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APPENDIX

19       The rest of the documentation details each of the object methods.
20       Internal methods are usually preceded with a _
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22   kbyte
23        Title     : kbyte()
24        Usage     : set/gets the amount of memory able to be used
25        Function  :
26                  : $factory->kbyte(200);
27                  :
28        Returns   :
29        Argument  : memory in kilobytes
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31   report
32        Title     : report()
33        Usage     : set/gets the report boolean to issue reports or not
34        Function  :
35                  : $factory->report(1); # reporting goes on
36                  :
37        Returns   : n/a
38        Argument  : 1 or 0
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40   set_memory_and_report
41        Title   : set_memory_and_report
42        Usage   : Only used by subclasses.
43        Function:
44        Example :
45        Returns :
46        Args    :
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50perl v5.12.0                      2010-04-29       Bio::Tools::AlignFactory(3)