1Bio::Tools::AlignFactorUys(e3r)Contributed Perl DocumentBaitoi:o:nTools::AlignFactory(3)
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NAME

6       Bio::Tools::AlignFactory - Base object for alignment factories
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SYNOPSIS

9       You wont be using this as an object, but using a dervied class like
10       Bio::Tools::pSW
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DESCRIPTION

13       Holds common Alignment Factory attributes in place
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CONTACT

16       http://bio.perl.org/ or birney@sanger.ac.uk
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APPENDIX

19       The rest of the documentation details each of the object methods.
20       Internal methods are usually preceded with a _
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22       kbyte
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24        Title     : kbyte()
25        Usage     : set/gets the amount of memory able to be used
26        Function  :
27                  : $factory->kbyte(200);
28                  :
29        Returns   :
30        Argument  : memory in kilobytes
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32       report
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34        Title     : report()
35        Usage     : set/gets the report boolean to issue reports or not
36        Function  :
37                  : $factory->report(1); # reporting goes on
38                  :
39        Returns   : n/a
40        Argument  : 1 or 0
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42       set_memory_and_report
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44        Title   : set_memory_and_report
45        Usage   : Only used by subclasses.
46        Function:
47        Example :
48        Returns :
49        Args    :
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53perl v5.8.8                       2007-05-07       Bio::Tools::AlignFactory(3)