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3pymcaroitool(1)        PyMca X-Ray Fluorescence Toolkit        pymcaroitool(1)
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NAME

8       pymcaroitool - PyMca region-of-interest imaging X application
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SYNOPSIS

12       pymcaroitool [OPTIONS]... [FILE(S)]
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DESCRIPTION

16       Start  the  graphical  user  interface  of the PyMca X-Ray Fluorescence
17       Toolkit region-of-interest imaging tool.
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19       This tool is best suited for handling datasets that can be  represented
20       by  three-dimensional arrays. Typical cases are stacks of images (first
21       dimension is image number) or 2D maps of 1D spectra (last dimension  is
22       spectrum channel number).
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24       It allows to display maps of particular regions of the spectra or spec‐
25       tra of a particular region of the map.
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27       A system of plugins allow to extend  the  capabilities  of  this  tool.
28       Plugins for multivariate analysis are already built in.
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31       If  FILE is given, it will be opened in the program provided its format
32       is supported.
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EXAMPLES

37       pymcaroitool
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39       Start the program with a file browser to select the input files.
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41       pymcaroitool file_0001.edf
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43       Tries to open the file named file_0001.edf and all indexed files of the
44       form file_????.edf where ???? is a number.
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46       pymcaroitool --imagestack=1 file_0001.edf
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48       Tries to open the file named file_0001.edf and all indexed files of the
49       form file_????.edf where ???? is a number as a set of images.
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52       pymcaroitool uncompressed_tiff_file_0001.tif
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54       Tries to open a series of uncompressed TIFF files as an image stack.
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56       pymcaroitool --begin=100 --end=200 --filepattern=file_%05d.edf
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58       Start the program loading the single indexed files from  file_00100.edf
59       to file_00200.edf
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61       pymcaroitool        --begin=10,100        --end=20,200       --filepat‐
62       tern=row%d_col%03d.dat
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64       Load the double indexed files from row10_col100.dat,  row10_col101.dat,
65       ...  to row20_col00199.dat, row20_col00200.dat
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CAVEATS

69       If files f_000.xxx and f_001.xxx are present in the same directory, the
70       program will always try to load both of them unless  a  cumbersome  way
71       using a file pattern is used.
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SEE ALSO

75       HDF5, h5py
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79ESRF                              March 2012                   pymcaroitool(1)
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