1GDCMTAR(1) DICOM Manipulation. GDCMTAR(1)
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6 gdcmtar - Concatenate/Extract DICOM files.
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9 gdcmtar [options] file-in file-out
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12 The gdcmtar is a command line tool used to tar/untar multi-frames
13 images (including SIEMENS MOSAIC file)
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16 file-in DICOM input filename
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18 file-out DICOM output filename
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21 specific options
22 --enhance Enhance (default)
23 -U --unenhance Unenhance
24 -M --mosaic Split SIEMENS Mosaic image into multiple frames.
25 --mosaic-private When splitting SIEMENS Mosaic image into multiple frames, preserve private attributes (advanced user only).
26 -p --pattern Specify trailing file pattern.
27 --root-uid Root UID.
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29 general options
30 -h --help
31 print this help text and exit
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33 -v --version
34 print version information and exit
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36 -V --verbose
37 verbose mode (warning+error).
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39 -W --warning
40 warning mode, print warning information
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42 -E --error
43 error mode, print error information
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45 -D --debug
46 debug mode, print debug information
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48 environment variable
49 GDCM_ROOT_UID Root UID
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52 SIEMENS Mosaic
53 This option will turn a 2D frame containing sub-frame of a SIEMENS
54 MOSAIC into a set of MR Image Storage (legacy).
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56 $ gdcminfo MR-sonata-3D-as-Tile.dcm
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58 MediaStorage is 1.2.840.10008.5.1.4.1.1.4 [MR Image Storage]
59 TransferSyntax is 1.2.840.10008.1.2.1 [Explicit VR Little Endian]
60 NumberOfDimensions: 2
61 Dimensions: (384,384,1)
62 ...
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64 $ gdcmtar --mosaic -i MR-sonata-3D-as-Tile.dcm -o mosaic --pattern %03d.dcm
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66 Will output:
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68 -rw-r--r-- 1 mathieu mathieu 72882 2009-08-10 11:14 mosaic000.dcm
69 -rw-r--r-- 1 mathieu mathieu 72886 2009-08-10 11:14 mosaic001.dcm
70 -rw-r--r-- 1 mathieu mathieu 72886 2009-08-10 11:14 mosaic002.dcm
71 -rw-r--r-- 1 mathieu mathieu 72886 2009-08-10 11:14 mosaic003.dcm
72 -rw-r--r-- 1 mathieu mathieu 72886 2009-08-10 11:14 mosaic004.dcm
73 -rw-r--r-- 1 mathieu mathieu 72886 2009-08-10 11:14 mosaic005.dcm
74 -rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic006.dcm
75 -rw-r--r-- 1 mathieu mathieu 72882 2009-08-10 11:14 mosaic007.dcm
76 -rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic008.dcm
77 -rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic009.dcm
78 -rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic010.dcm
79 -rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic011.dcm
80 -rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic012.dcm
81 -rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic013.dcm
82 -rw-r--r-- 1 mathieu mathieu 72882 2009-08-10 11:14 mosaic014.dcm
83 -rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic015.dcm
84 -rw-r--r-- 1 mathieu mathieu 72882 2009-08-10 11:14 mosaic016.dcm
85 -rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic017.dcm
86 -rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic018.dcm
87 -rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic019.dcm
88 -rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic020.dcm
89 -rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic021.dcm
90 -rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic022.dcm
91 -rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic023.dcm
92 -rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic024.dcm
93 -rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic025.dcm
94 -rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic026.dcm
95 -rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic027.dcm
96 -rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic028.dcm
97 -rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic029.dcm
98 -rw-r--r-- 1 mathieu mathieu 72882 2009-08-10 11:14 mosaic030.dcm
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100 $ gdcminfo mosaic000.dcm
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102 MediaStorage is 1.2.840.10008.5.1.4.1.1.4 [MR Image Storage]
103 TransferSyntax is 1.2.840.10008.1.2.1 [Explicit VR Little Endian]
104 NumberOfDimensions: 2
105 Dimensions: (64,64,1)
106 ...
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108 By default all private attributes are removed since they may not match
109 the newly generated SOP Instance. One way to preserve the private
110 attributes is to use the --mosaic-private command line option
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112 $ gdcmtar --mosaic --mosaic-private -i MR-sonata-3D-as-Tile.dcm -o mosaic --pattern %03d.dcm
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115 gdcmdump(1), gdcmraw(1), gdcminfo(1)
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118 Mathieu Malaterre
119 Main developer
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122 Copyright © 2006, 2011 Mathieu Malaterre
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126GDCM 3.0.8 12/05/2020 GDCMTAR(1)