1h5jam(1) General Commands Manual h5jam(1)
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6 h5jam - Add a user block to a HDF5 file
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9 h5jam -u user_block -i in_file.h5 [-o out_file.h5] [--clobber]
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12 h5jam concatenates a user_block file and an HDF5 file to create an HDF5
13 file with a user block. The user block can be either binary or text.
14 The output file is padded so that the HDF5 header begins on byte 512,
15 1024, etc.. (See the HDF5 File Format.)
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17 If out_file.h5 is given, a new file is created with the user_block fol‐
18 lowed by the contents of in_file.h5. In this case, infile.h5 is
19 unchanged.
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21 If out_file.h5 is not specified, the user_block is added to in_file.h5.
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23 If in_file.h5 already has a user block, the contents of user_block will
24 be added to the end of the existing user block, and the file shifted to
25 the next boundary. If --clobber is set, any existing user block will be
26 overwritten.
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29 Create new file, newfile.h5, with the text in file mytext.txt as the
30 user block for the HDF5 file file.h5.
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32 h5jam -u mytext.txt -i file.h5 -o newfile.h5
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34 Add text in file mytext.txt to front of HDF5 dataset, file.h5.
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36 h5jam -u mytext.txt -i file.h5
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38 Overwrite the user block (if any) in file.h5 with the contents of
39 mytext.txt.
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41 h5jam -u mytext.txt -i file.h5 --clobber
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44 h5jam returns the size of the output file, or -1 if an error occurs.
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47 This tool copies all the data (sequentially) in the file(s) to new off‐
48 sets. For a large file, this copy will take a long time.
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50 The most efficient way to create a user block is to create the file
51 with a user block (see H5Pset_user_block), and write the user block
52 data into that space from a program.
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54 The user block is completely opaque to the HDF5 library and to the
55 h5jam and h5unjam tools. The user block is simply read or written as a
56 string of bytes, which could be text or any kind of binary data. It is
57 up to the user to know what the contents of the user block means and
58 how to process it.
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60 When the user block is extracted, all the data is written to the out‐
61 put, including any padding or unwritten data.
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63 This tool moves the HDF5 file through byte copies, i.e., it does not
64 read or interpret the HDF5 objects.
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67 h5dump(1), h5ls(1), h5diff(1), h5import(1), gif2h5(1), h52gif(1),
68 h5perf(1), h5unjam(1).
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72 h5jam(1)