1hmmc2(1)                         HMMER Manual                         hmmc2(1)
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NAME

6       hmmc2 - example client for the HMMER daemon
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SYNOPSIS

11       hmmc2 [options]
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DESCRIPTION

16       Hmmc2  is a text client for the hmmpgmd or hmmpgmd_shard daemons.  When
17       run, it opens a connection to a daemon at the specified IP address  and
18       port, and then enters an interactive loop waiting for the user to input
19       commands to be sent to the daemon.  See the User's Guide for the  HMMER
20       Daemon for a discussion of hmmpgmd's command format.
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OPTIONS

25       -i <IP address>
26              Specify  the  IP address of the daemon that hmmc2 should connect
27              to.  Defaults to 127.0.0.1 if not provided
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31       -p <port number>
32              Specify the port number that the daemon is  listening  on.   De‐
33              faults to 51371 if not provided
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37       -S     Print the scores of any hits found during searches.
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41       -A     Print  the alignment of any hits found during searches.  This is
42              a superset of the "-S" flag, so providing both is redundant.
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SEE ALSO

48       See hmmer(1) for a master man page with a list of  all  the  individual
49       man pages for programs in the HMMER package.
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52       For  complete documentation, see the user guide that came with your HM‐
53       MER distribution (Userguide.pdf); or see the HMMER web page (http://hm‐
54       mer.org/).
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60       Copyright (C) 2020 Howard Hughes Medical Institute.
61       Freely distributed under the BSD open source license.
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63       For  additional  information  on  copyright and licensing, see the file
64       called COPYRIGHT in your HMMER source distribution, or  see  the  HMMER
65       web page (http://hmmer.org/).
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AUTHOR

70       http://eddylab.org
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77HMMER 3.3.2                        Nov 2020                           hmmc2(1)
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