1hmmindex(1)                      HMMER Manual                      hmmindex(1)
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NAME

6       hmmindex - create a binary SSI index for an HMM database
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SYNOPSIS

10       hmmindex [options] database
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DESCRIPTION

14       hmmindex is a utility that creates a binary SSI ("squid sequence index"
15       format) index for an HMM database file called database.  The new  index
16       file is named database.ssi.  An SSI index file is required for hmmfetch
17       to work, and also for the PVM implementation of hmmpfam.
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OPTIONS

21       -h     Print brief help; includes version number  and  summary  of  all
22              options, including expert options.
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SEE ALSO

28       Master  man  page,  with  full  list of and guide to the individual man
29       pages: see hmmer(1).
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31       For complete documentation, see the user guide that came with the  dis‐
32       tribution    (Userguide.pdf);    or    see    the   HMMER   web   page,
33       http://hmmer.wustl.edu/.
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COPYRIGHT

37       Copyright (C) 1992-2003 HHMI/Washington University School of Medicine.
38       Freely distributed under the GNU General Public License (GPL).
39       See the file COPYING in your distribution for details on redistribution
40       conditions.
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AUTHOR

44       Sean Eddy
45       HHMI/Dept. of Genetics
46       Washington Univ. School of Medicine
47       4566 Scott Ave.
48       St Louis, MO 63110 USA
49       http://www.genetics.wustl.edu/eddy/
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55HMMER 2.3.2                        Oct 2003                        hmmindex(1)