1Ace::Graphics::Glyph::tUrsaenrscCroinpttr(i3b)uted PerlADcoec:u:mGernatpahtiicosn::Glyph::transcript(3)
2
3
4

NAME

6       Ace::Graphics::Glyph::transcript - The "gene" glyph
7

SYNOPSIS

9         See L<Ace::Graphics::Panel> and L<Ace::Graphics::Glyph>.
10

DESCRIPTION

12       This glyph draws a series of filled rectangles connected by up-angled
13       connectors or "hats".  The rectangles indicate exons; the hats are
14       introns.  The direction of transcription is indicated by a small arrow
15       at the end of the glyph, rightward for the + strand.
16
17       The feature must respond to the exons() and optionally introns() meth‐
18       ods, or it will default to the generic display.  Implied introns (not
19       returned by the introns() method) are drawn in a contrasting color to
20       explicit introns.
21
22       OPTIONS
23
24       In addition to the common options, the following glyph-specific option
25       is recognized:
26
27         Option                Description                    Default
28         ------                -----------                    -------
29
30         -implied_intron_color The color to use for gaps      gray
31                               not returned by the introns()
32                               method.
33
34         -draw_arrow           Whether to draw arrowhead      true
35                               indicating direction of
36                               transcription.
37

BUGS

39       Please report them.
40

SEE ALSO

42       Ace::Sequence, Ace::Sequence::Feature, Ace::Graphics::Panel,
43       Ace::Graphics::Track, Ace::Graphics::Glyph::anchored_arrow, Ace::Graph‐
44       ics::Glyph::arrow, Ace::Graphics::Glyph::box, Ace::Graph‐
45       ics::Glyph::primers, Ace::Graphics::Glyph::segments, Ace::Graph‐
46       ics::Glyph::toomany, Ace::Graphics::Glyph::transcript,
47

AUTHOR

49       Lincoln Stein <lstein@cshl.org>.
50
51       Copyright (c) 2001 Cold Spring Harbor Laboratory
52
53       This library is free software; you can redistribute it and/or modify it
54       under the same terms as Perl itself.  See DISCLAIMER.txt for dis‐
55       claimers of warranty.
56
57
58
59perl v5.8.8                       2001-02-20Ace::Graphics::Glyph::transcript(3)
Impressum